If objects are very close to each other, iterative thresholding can perform better than local thresholding. Iterative thresholding will compute all possible thresholds and choose which one is best for each different object, based on different criteria like shape, volume or edges. This automatic threshold may not be the best for all the objects within the patch. Local thresholding works on adjacent patches and computes only one automatic threshold. Q7: Regarding the iterative thresholding: how does this relate to the auto-local-threshold in ImageJ? Could one get similiar results? Please do not forget to install ImageScience (see Q2 for main documentation page), this dependency may be removed in the future version. My other problem was the plugins arent showing up but I think the installation and download section here has everything I need: My other problem was the plugins arent showing up but I think the installation and download section here has everything I need: I've had so much trouble with it in the past I just assumed it wasn't working but the voxel sizes had changed when I loaded my data so it just wasn't displaying.
Q5: Im using fiji, only message I get is this: 1.6.0-scijava-2-pre11-daily-experimental daily Q4: is the 3D ImageJSuite free and where do i download it from please? If you are using ImageJ, check the installation information for the 3D ImageJ Suite. Do you use ImageJ or Fiji? In Fiji, the 3D Viewer is working fine. The Java3D library is no longer maintained, Fiji provides an open-source replacement that works as fine. How have you guys been getting around this? I've probably missed something really obvious, but thanks for any help. Q3: Also, silly question but I often have trouble getting the 3D tools even working in the first place, even the 3D viewer. It can be installed in Fiji as an update site. Yes, it is free and open-source, the main documentation is available on the 3D ImageJ Suite website. Q2: were do i download this 3d suite? is it free? This temporary dropbox contains the slides for the presentation with some sample data and the latest update of the plugins. Q1: Can I have the link to the github page for the slides, please ? Speaker: Mafalda Sousa, of the webinar: on the Youtube channel of NEUBIAS ( video). On the 26th of May 2020, was given the NEUBIAS Academy webinar “ Introduction to 3D Analysis with 3D ImageJ Suite”.
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